rs239438804 SNP Detail

Summary

• ID
  rs239438804
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:59518427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAAAC CCAACTCAAA
  CCAAACCAAA AACCCCAAAA CTCAGTGAGT TTGTGAAGGC CATCCCAGGG AGCTGAGCAG
  AGGAGGACGG GGCACATGTT TAGCTGAGGT GTCATGGCAA CGGTGGTTTG TGGTGATGTA
  TCTCCCAGAA GAGGCTAACA AAGGGGGAGG AGGTACATAC AGCATTCAGG TTAAGATAAC
  Y
  CATCACAGTA TTGGTTGGGT TCATTGTCCA GTAACAGGCC CAGCGGGCAG CTCAGTACAT
  CCTAAGATTC CTTCAGGAGA GAATCTTATC AGGTAGGACA AAAAACCTCA GGGTCTAGTG
  CAACTTCCTA AACATACTTA GTCCCGATAA CCTGTCAAGA TTCAGCTCCC TCTCCTAGCC
  AAGCTGCTGT TCCGTACACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394214931	MGP_WTSI_15_59478133	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	C	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239438804					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	C	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394214931	MGP_WTSI_15_59478133	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:59518427 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7127	CpG island 7127	861 bp proximal
Gm56697	predicted gene, 56697	within coordinates
Rr502886	regulatory region 502886	835 bp distal
Rr502887	regulatory region 502887	within coordinates
Rr502888	regulatory region 502888	1600 bp proximal
Rr502889	regulatory region 502889	1836 bp proximal
Tssr131384	transcription start site region 131384	1719 bp upstream
Tssr131385	transcription start site region 131385	1778 bp upstream
Tssr131386	transcription start site region 131386	1844 bp upstream
Tssr131387	transcription start site region 131387	1925 bp upstream
Tssr131388	transcription start site region 131388	1972 bp upstream
Tssr131389	transcription start site region 131389	2000 bp upstream
Tssr134443	transcription start site region 134443	220 bp upstream
Tssr134444	transcription start site region 134444	1517 bp downstream
Tssr134445	transcription start site region 134445	1564 bp downstream