rs239438842 SNP Detail

Summary

• ID
  rs239438842
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7507100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAAAGTGTG TATGAGAGAG GTGGAGAGCA
  TGCATAAAAA CACACAGATA CTGAGAGACA GAGATATAGT GATCATGAGA GAAaggggag
  gggagaggag agaaaacgaa tagaggaaag aggaggaaag gcgaggcgga ggggagggaa
  R
  gagaAGCCAG AGCACCTAGA GGTAAAAAAA CGGAGAGACA CAGGGAAAGA GAAACAGCCA
  CACCCCTGTA ATCAGCTTGT GCTAGGACCC GATGAGCCCT GATTAGAGGG GTGGGGGTGG
  GGACCTCTCC ATCTGCTACT GTCTGTGCTG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325888092	CHEV_X_7217987	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239438842					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7507100 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22570	CpG island 22570	1911 bp distal
Rr689618	regulatory region 689618	327 bp distal
Syp	synaptophysin	within coordinates
Tssr160398	transcription start site region 160398	232 bp upstream