rs239440740 SNP Detail

Summary

• ID
  rs239440740
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55151092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGTGTGGTT TATGCAGATG GACGAATCCG
  TTGGCACCCT GCTTCTGCTC TTTAGCTTCC ATTCTCTTCA GGGGAACAAG TCTCTGCGTT
  TCCCCACACC GAACTCGGTT GGATCACCAT TTTCCAGCAA CGTTTGGCAC TGCTGACCAC
  Y
  TTCTAACCTT CCTCCCTTGA CTGCCAAGTC TCACCTTGTG GCTTTTTTCT CCTGTCCATT
  TTCTCCATGG CAGTCACATG TTCCTTCTCC TGTTCAGCGT TATGTGTACC TTACCATCTC
  ATGCCTTTAC CTCCGCACTA TTTGTATTAG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324640833	CHEV_14_55532472	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239440740					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55151092 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6478	CpG island 6478	329 bp distal
Slc22a17	solute carrier family 22 (organic cation transporter), member 17	503 bp upstream
Tssr128658	transcription start site region 128658	1304 bp upstream
Tssr128659	transcription start site region 128659	1177 bp upstream
Tssr128660	transcription start site region 128660	593 bp upstream
Tssr128661	transcription start site region 128661	551 bp upstream
Tssr128662	transcription start site region 128662	507 bp upstream