rs239441110 SNP Detail

Summary

• ID
  rs239441110
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:59839200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAGCACCCA GCGCCCCTCG GCAGCTGCTG
  GACTCCTGGT GCTATGGCTT CCTCTGGGGT GGCGGGTGGG AGACAGGCCG AAGATAcgct
  acagccaccg cccgagctgc tgccggagtc caagccgcca ccaccgcctc agcctctgcc
  R
  gtcgctgcgc tcccgccgcc ggcggctccg cggcctcagt cccccgctgg cgcGAAGGAG
  GAGAATTACT CCTTTTTGCC GTTGGTTCAC AATGTCATCA AATGGTAAGG GTCTAGGAAA
  GGTTAAGACA CCACTTTTTG CGACTCTAGT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323699687	CHEV_11_59761876	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239441110					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:59839200 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2971	CpG island 2971	within coordinates
Med9	mediator complex subunit 9	within coordinates
Med9os	mediator complex subunit 9, opposite strand	227 bp upstream
Rr448290	regulatory region 448290	240 bp distal
Rr448291	regulatory region 448291	within coordinates
Tssr101871	transcription start site region 101871	113 bp downstream
Tssr108257	transcription start site region 108257	273 bp upstream
Tssr108258	transcription start site region 108258	211 bp upstream
Tssr108259	transcription start site region 108259	193 bp upstream