rs239442704 SNP Detail

Summary

• ID
  rs239442704
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:136609324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTGAAAAA CTGAGTTCAA
  TCCCCAAAAC CCACAGAGTG AGAGAGAATC AGCATAAGTG GTCCATACAC ACACACACAC
  ACACACACAA AACCTAGTAA GAAAATTGTT TTTAATTTCC CTGGGGAGAC AGTTCAGTTG
  GCTAAGTGCT TGTCACACAA GCATGAGAAG CTGGGTGCAA ACCCAGGTAA AAAAGCTTGA
  K
  CTAGAGGCAC ATGGCACCCA TAATCCCAGC ACTTGGGAGG CAGACACAGG AGGATACATC
  TCTAGGGTTT GCTAGCCAGC TAGACTAGCT GCATTAGATA GCTCAAGATT CTGTGAAGAC
  CTCCTACCCC CAAAGACACA CAAACACAGG TACACACATA CTACACATAC ACACACTTAT
  ACACATATAC ATATATATAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366858420	MGP_WTSI_5_137056340	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239442704					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366858420	MGP_WTSI_5_137056340	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:136609324 () rs orientation: forward

Symbol	Name	Function Class
Rr622654	regulatory region 622654	690 bp proximal
Tssr1674	transcription start site region 1674	1173 bp downstream
Tssr1675	transcription start site region 1675	1228 bp downstream
Tssr53860	transcription start site region 53860	1101 bp downstream
Tssr53861	transcription start site region 53861	1150 bp downstream
Tssr53862	transcription start site region 53862	1200 bp downstream
Tssr53863	transcription start site region 53863	1213 bp downstream
Tssr53864	transcription start site region 53864	1250 bp downstream
Tssr53865	transcription start site region 53865	1282 bp downstream
Tssr53866	transcription start site region 53866	1310 bp downstream
Tssr53867	transcription start site region 53867	1379 bp downstream