rs239447983 SNP Detail

Summary

• ID
  rs239447983
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:87952231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATTTTTGC GGGTTTGTGC
  TGAAATCGCA AGAACGCACA CCCAAACAAA CTTATTTAAA CAGAGAGCAA GAGAAATCCA
  CGCTACCAAA GAAAAAAAAG AAGGGGGAAA AAAGCCTCCT GATAGCAATC TCTGGGACTG
  AACAGCCCCC AGCAACCTTA AATCCCTTTC CCTATCTACT CCGAGCCACC AACCTACCCC
  R
  CCCTCCCACC GTCGCCACTG AAAACTTTAA AAAAGAAAAA GAAAAAAAAA GAAAAGAAAA
  AAAGAAATGA ACGCGAAACA AGAATGCCAT TTCCTTCCTA GGAAACGCCT CCCGCCTCGG
  TGTTCCCGGG CTGAGAACCG TGCCCAGGTG GAGGCGGGAC ACCTGGGAGT GCCCGTCGCA
  GAGCCTTAGG GAACCCGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362318130	MGP_WTSI_4_87679898	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239447983					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362318130	MGP_WTSI_4_87679898	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:87952231 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14428	CpG island 14428	203 bp distal
Gm12631	predicted gene 12631	within coordinates
Mllt3	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	630 bp upstream
Rr90573	regulatory region 90573	1570 bp proximal
Rr101188	regulatory region 101188	within coordinates
Rr398326	regulatory region 398326	328 bp upstream
Rr398327	regulatory region 398327	1473 bp upstream
Tssr42372	transcription start site region 42372	1245 bp upstream
Tssr42373	transcription start site region 42373	1192 bp upstream
Tssr42374	transcription start site region 42374	1172 bp upstream
Tssr42375	transcription start site region 42375	1131 bp upstream
Tssr42376	transcription start site region 42376	706 bp upstream
Tssr42377	transcription start site region 42377	679 bp upstream
Tssr42378	transcription start site region 42378	621 bp upstream