rs239451483 SNP Detail

Summary

• ID
  rs239451483
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151824150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCATGGCA TCCTCTTGGG
  AAAGTTTCCA CCCAGCCTTC CCACTTACTC CCACGCAATC ACACAATCAC ATTTATTATA
  TTTTTATTTA TTTAGTATTT ATGTGTTATT ATATATTAAT TCATACATTT ATAAATTATA
  CGTATATATT ATTATATAAA CATTATATTA TAATATACTT ACATATTATT ACATTTATTT
  R
  TTATTATGCC CAGCTCCTGA ATGAACTGTG CAGTCTACAT CACAGCGCGG CAGCCTCTGA
  GCCTGCGGGA CATTGTAAAG CAGGAACACC ACACACTGTT AACACCTCGG ACCTGGCCAG
  GCTTCTCTCT CCCTACACTT CCTCTCCACC CTCTGTGACT CGGTGAGTAA TGAATCCACC
  CCAAGACTCA GTTTCCTCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321028126	CHEV_3_151781477	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239451483					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151824150 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Rr587459	regulatory region 587459			1770 bp distal
Rr587460	regulatory region 587460			1593 bp proximal
Tssr1098	transcription start site region 1098			1583 bp downstream
Tssr32394	transcription start site region 32394			1797 bp upstream