rs239455613 SNP Detail

Summary

• ID
  rs239455613
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:26495915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGGCTGCT AGGATCCCAG
  CTGAGATCTC CAAGGCATCA GGTCCTCACA GCTCTGCAGC CCCCTCAGGA ATGTATGCTG
  AGTCCTTCCT GCCTTTTAAT TCTAACCAAC CTGGTGTCCT TTTTATTTAT TCATTTAGCG
  TATTGGTTTA TGTTTTTAAG GTTTTTTGTT TGGTTTGGTT TGGTTTGTTT TTTTGGGGGG
  K
  GGGTTGTTTT TGTTTTTTTG AGACAGGGTT TCTCTGTGTA GCCCTGGCTG TCCGGGAACC
  TACTCTGTAG ACCAGGCTGG CCTCGAACTC AGAAATCCAC CTGCCTCTGC CTCCCAAGTT
  CTGGAATTAA AGGCGTGTGC CACCACGCCC GGCCGTCTTT AAGTTTTAAA GGTTTATTTT
  ATGTGTGTGA AGTGTTTTAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353433496	MGP_WTSI_2_26461423	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239455613					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353433496	MGP_WTSI_2_26461423	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:26495915 () rs orientation: forward

Symbol	Name	Function Class
Agpat2	1-acylglycerol-3-phosphate O-acyltransferase 2	1486 bp upstream
Cpgi11355	CpG island 11355	1003 bp distal
Gm20532	predicted gene 20532	within coordinates
Gm39772	predicted gene, 39772	1202 bp downstream
Rr42175	regulatory region 42175	115 bp distal
Rr42176	regulatory region 42176	1286 bp proximal
Rr56481	regulatory region 56481	914 bp distal
Tssr16811	transcription start site region 16811	1829 bp downstream
Tssr16812	transcription start site region 16812	1397 bp downstream
Tssr23136	transcription start site region 23136	1729 bp upstream
Tssr23137	transcription start site region 23137	1676 bp upstream
Tssr23138	transcription start site region 23138	1651 bp upstream
Tssr23139	transcription start site region 23139	1594 bp upstream
Tssr23140	transcription start site region 23140	1473 bp upstream
Tssr23141	transcription start site region 23141	1278 bp upstream
Tssr23142	transcription start site region 23142	1911 bp downstream