rs239458247 SNP Detail

Summary

• ID
  rs239458247
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30825285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGGGTTCA CTCTAGCTCT
  GTTTCTTTCT TCCCCTAGCT TCTGTGTTGG AATCCATCCC CTCCCGATCT TCACCATCTT
  GCCCTGTCCC CTCTTCCGCA GACTCACTTC CTCGCTTCAA GACCTTCACC CCAAGTTAAA
  AGTTCTTTGC TTCACCACTG GGTTAGAGGC CTCTGGTCCC TCTTTCACCC ACTTACCTGC
  Y
  ACCTCTTGTG TCCCACCACA CACTAACTGT ATAAGTCATG TCACCAACTT TAGCTCTGGG
  TCTTTTCCTT GTCTCCCCAA CCCCCAACCT CCTGATCTCT TAGTCTTCAA GGCTTCTGGT
  TCACCTTCCC GTTTGCTCCA GTCTCCCCCA TGTTTATTCC TCCTAAAGGT CTCTGAAGAT
  CCCAGCAGGG CTGTATTCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322139525	CHEV_7_31910879	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239458247					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30825285 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18836	CpG island 18836	435 bp distal
Cpgi18837	CpG island 18837	334 bp proximal
Rr645025	regulatory region 645025	within coordinates
Rr645026	regulatory region 645026	974 bp proximal
Scn1b	sodium channel, voltage-gated, type I, beta	within coordinates
Tssr71935	transcription start site region 71935	856 bp downstream
Tssr71936	transcription start site region 71936	899 bp downstream
Tssr71937	transcription start site region 71937	1061 bp downstream
Tssr71938	transcription start site region 71938	1090 bp downstream
Tssr71939	transcription start site region 71939	1133 bp downstream
Tssr71940	transcription start site region 71940	1304 bp downstream