rs239459246 SNP Detail

Summary

• ID
  rs239459246
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132461354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGATCAAAC AGCCGCTGTT
  TGTTACCCTG AGCTTGGTTC CAATGAGGTG ACTGCATCTG AACCCCCATT TTCCTGGTGA
  AGACATGGAG GCCTTAAAGA GGTCGTTATG GTTTGAATCT GAAGTGCCCC CCCGCCCCCC
  CTCCCTTCAT TTTGAATGTT TGTTTCCCAA CCACTGTAGC ATTTTTAGGT AGTGGATTCC
  R
  GCTGGCAAAA GGAAACCTTT GAACCTGGTT CTGGATCCTG CCCAGTGGCG ATATGAGGGG
  CTCCTGATAC ATTGCCACAG TGCTTCGGCA CCATTAACTG CCAGGCCTTC ACAGGTTGGT
  ATAGCAATCA CAGCATTGCA AAAGTAATGT TGCCTTCTCG GGGTCTGCGA GCTTTCAGGG
  GCAGGGCGGG ATTAGGACGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363300704	MGP_WTSI_4_132289958	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239459246					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363300704	MGP_WTSI_4_132289958	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132461354 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14969	CpG island 14969	1410 bp distal
Cpgi14970	CpG island 14970	257 bp distal
Gm69628	predicted gene, 69628	937 bp upstream
Rr398540	regulatory region 398540	1186 bp downstream
Rr601049	regulatory region 601049	1588 bp distal
Rr601050	regulatory region 601050	1503 bp distal
Rr601051	regulatory region 601051	1096 bp distal
Rr601052	regulatory region 601052	1829 bp proximal
Rr601053	regulatory region 601053	1915 bp proximal
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	within coordinates
Tssr43696	transcription start site region 43696	1605 bp upstream
Tssr43697	transcription start site region 43697	1485 bp upstream
Tssr43698	transcription start site region 43698	1457 bp upstream
Tssr43699	transcription start site region 43699	782 bp downstream
Tssr43700	transcription start site region 43700	794 bp downstream
Xkr8	X-linked Kx blood group related 8	1497 bp upstream