rs239464082 SNP Detail

Summary

• ID
  rs239464082
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164724474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGATTTG AACTCCAGAC
  CTTTGGAAGA GCAGTCGGGT GTTCTTACCC ACTGAGCCAT CTCACCAGCC CAGATTTCTG
  AGTTCAAGGC CAGCCTGGTC TACAAAGTGA GTTCCAGGAC AGCCAGAGCT ACACAGAGAA
  ACCCTATCTC AGAAAACCAA ACTAAACCAA AGAATCGCCC CCCCCCCCCC CAAAAAAAAA
  A
  GTGTGTGTGT GTGGTCTGTC TCAGCATATT TAGACAGGGT CACACTCTAT AGACCAGGCT
  GATCTTGAAC TCAGAGAACA TGAGAACAAC TTTGATTCAT TGAGCCTCTA GACCCTCACA
  GTGTGTCTTT GTCCCTCCGC TGTGTCTTTG TTCCTCTGCT GTTGTCCCTG CCTGGCAAGG
  CTTCACGGGC CAATGACTCT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	WSB/EiJ	ZALENDE/EiJ
ss356442938	MGP_WTSI_2_164708054	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	WSB/EiJ	ZALENDE/EiJ
rs239464082					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356442938	MGP_WTSI_2_164708054	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164724474 () rs orientation: forward

Symbol	Name	Function Class
4930445K14Rik	RIKEN cDNA 4930445K14 gene	within coordinates
Pcif1	phosphorylated CTD interacting factor 1	Intron
Rr569755	regulatory region 569755	within coordinates