rs239466142 SNP Detail

Summary

• ID
  rs239466142
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:95240723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACAACCCAT GCTCCAATGC CCCAGGCAGG
  TGTCTGGTTT TTCTCAGTGT TACTTGATGG AAATCTTAGA TAAAGGCAAC ATTATTCAAA
  TGTAAGAGAA CTAAATTTGG AGTTCAAGTT CTGTAAAGTA AACTAGAGTA GGCAGATCAC
  W
  GCCCCAGGTA TTTGCTaagg taatatacaa actttctctc ttccataagt tcagggatag
  ttttgcagct tgaggcagcc catagcaaaa actagttaac aggggcacaa ttttcttgtt
  ggttttattt caaaaggatg actgtaggtc                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319848309	CHEV_1_97209575	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239466142					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:95240723 () rs orientation: forward

Symbol	Name	Function Class
Cpgi614	CpG island 614	430 bp proximal
Fam174a	family with sequence similarity 174, member A	630 bp upstream
Rr29863	regulatory region 29863	77 bp proximal
Rr396183	regulatory region 396183	363 bp upstream
Tssr8214	transcription start site region 8214	609 bp upstream
Tssr8215	transcription start site region 8215	680 bp upstream
Tssr8216	transcription start site region 8216	1089 bp upstream
Tssr8217	transcription start site region 8217	1108 bp upstream
Tssr8218	transcription start site region 8218	1126 bp upstream
Tssr8219	transcription start site region 8219	1152 bp upstream
Tssr13058	transcription start site region 13058	1057 bp downstream