rs239473442 SNP Detail

Summary

• ID
  rs239473442
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:59699073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGTGCTTT GGATCTTAAA
  AAACAAAAAT CGTGCCGGGT GTGGTGGCGC ACGCCTTTAA TCCCAGCACT TGGGAGGCAG
  AAATAGGCAG ATTTCTGAGT TCGAGGCCAG CCTCTTCAAC AAAGTGAGTT CTAGGACAGC
  CAGAGCTACA GAGAAACCCT GTCTCAAAAA ACCAAAAAAA CAAACAAACA AACAAAAAAC
  M
  AAAATTGTGG GCTTGAGAAA TGGCTCAGTG GTTAGGAGCA CTGACTGCTT TTCCAGAAGT
  CCTGAGTTCA CCTCCCAGCA ACCACATGGT GGCTCACAAC CATCTGTAAC GGGATCCGAT
  GCCCTCTTCT GGTGCTGACT GAAGACAGCT ACAGTGTATA AATAAATAAA TAAATCTTTA
  AAAAAGAAAA AAAGGGGGTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss383552895	MGP_WTSI_11_59621749	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	C	C	C	C	A	C	C	C	C	A	A	A	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs239473442					SNP	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	C	C	C	C	A	C	C	C	C	A	A	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383552895	MGP_WTSI_11_59621749	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:59699073 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2968	CpG island 2968	1289 bp proximal
Flcn	folliculin	within coordinates
Gm16062	predicted gene 16062	1833 bp upstream
Rr448261	regulatory region 448261	116 bp proximal
Rr448262	regulatory region 448262	277 bp proximal
Rr448263	regulatory region 448263	1331 bp proximal
Rr448264	regulatory region 448264	1615 bp proximal
Rr448265	regulatory region 448265	1759 bp proximal
Tssr101863	transcription start site region 101863	1860 bp upstream
Tssr108246	transcription start site region 108246	1527 bp downstream
Tssr108247	transcription start site region 108247	1779 bp downstream