rs239475237 SNP Detail

Summary

• ID
  rs239475237
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:3683355 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGTGACTTT GCTGGCCCAT CTTCTCTGTG
  AATGCCTCTT AGTCCTCACA TGATAATTCA TTTGTCATCC TCAGGCCTTT AAGAGAGCTG
  TCAGAATGAA CAAATTTTTA ATCCAAGAAA ACTATGTGAG AAACTGAAAT CAATTTTTTA
  Y
  ACTTCTTCTT TTTACCTTTT TACTCATTTC TATTTTAAGA GAGCAACGGA ATGGGAGGGT
  GCTGGGGAGA AAGACAGAAT GTTGCTGGTA TGATGTTTGC CTAGTACTCA CTTCTGATTT
  GCTCTGTCaa aaaaaaaaaa aaaaaaaaaa                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320633689	CHEV_3_3618295	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239475237					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:3683355 () rs orientation: forward

Symbol	Name	Function Class
Hnf4g	hepatocyte nuclear factor 4, gamma	Intron
Rr573144	regulatory region 573144	59 bp proximal