rs239482477 SNP Detail

Summary

• ID
  rs239482477
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95559196 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTAGTTTT GTTTTGTTTT
  TTGAGACACG GTCTTGCTAT ACTGCCCTGG TTTCGAAACT GGGTTCCTGC CTCAGCCTCA
  CTCAGCCTCT GGGCTCTTGG AATCACAAGT GTCCACCATA GTACCCGCTC CAACGAACTG
  ATTCAAGGCA AAGGTGAACT CTGGATAGAT TATTCTGTGC TGGGAACTGA TTCCAGGGGG
  Y
  CCTCACTGGA TCACAACCTG TACCCCAGGC TCCAATGTTG ACTACTTTTG TTAGAACCAA
  ACTATATACT CTCAAAATGC TGAGGCAGGA GGATCACAAG TTTGGGCTAT GTCATGAAGC
  TCTATCTCAA AAAAAAAAAA AAAAAAAAAA AAGAGGAAAG AAAGAAACCA CCTAGGCCAG
  CAGCTTTATT AGCCCAGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358905237	MGP_WTSI_3_95455807	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239482477					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358905237	MGP_WTSI_3_95455807	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95559196 () rs orientation: forward

Symbol	Name	Function Class
Gm64625	predicted gene, 64625	1412 bp downstream
Gm65002	predicted gene, 65002	1986 bp upstream
Rr366848	regulatory region 366848	within coordinates
Rr580996	regulatory region 580996	1744 bp distal
Rr580997	regulatory region 580997	1069 bp distal
Rr580998	regulatory region 580998	441 bp proximal
Rr580999	regulatory region 580999	1929 bp proximal
Rr581000	regulatory region 581000	1997 bp proximal
Tssr971	transcription start site region 971	1890 bp downstream
Tssr30615	transcription start site region 30615	998 bp downstream
Tssr30616	transcription start site region 30616	979 bp downstream
Tssr30617	transcription start site region 30617	948 bp downstream
Tssr30618	transcription start site region 30618	374 bp downstream
Tssr30619	transcription start site region 30619	86 bp downstream
Tssr30620	transcription start site region 30620	1865 bp upstream
Tssr34502	transcription start site region 34502	1359 bp upstream
Tssr34503	transcription start site region 34503	544 bp upstream
Tssr34504	transcription start site region 34504	125 bp downstream
Tssr34505	transcription start site region 34505	509 bp downstream
Tssr34506	transcription start site region 34506	1833 bp downstream