rs239482884 SNP Detail

Summary

• ID
  rs239482884
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:8472085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTCAGCA GGACCTTCAG
  GCTTTTTAAA ATTCAAACTG CTCCCCGACC AATACAAATC ACGGACACGC TACTGACTAC
  TACACGGATT TATAGCATTA AAAACATGCC TAGTACGTGA CAGCTATATT AACTTCACTC
  TTTTTAACAT TTATCCATAC GTTTTCAGGA AAGGTGGAGC AATTTTTTGT AAGCAGCATG
  Y
  TAAACTCAAA AATAACCCGC AAAAAAGTTA TTCTACAGTG ACAAAAACTT AAGACCCAGA
  ATATTTAAAG GGCTATTTTA ACCACTACCA TTACGAGGGG CCGCCTTGAG TAGTGTTGCT
  ACCTTTTAAC AAATGAGTTC TCCCTCAGCG AATATGAAAC AAAGTATCAA ACGGGACATT
  TCTTTTTCTG TGCAATTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392965625	MGP_WTSI_15_8392601	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239482884					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392965625	MGP_WTSI_15_8392601	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:8472085 () rs orientation: forward

Symbol	Name	Function Class
AW557046	expressed sequence AW557046	within coordinates
Cpgi6933	CpG island 6933	885 bp proximal
Nipbl	NIPBL cohesin loading factor	within coordinates
Rr369900	regulatory region 369900	282 bp upstream
Rr499033	regulatory region 499033	67 bp distal
Rr499034	regulatory region 499034	63 bp proximal
Rr499035	regulatory region 499035	1852 bp proximal
Tssr130591	transcription start site region 130591	1004 bp upstream
Tssr133664	transcription start site region 133664	1563 bp downstream
Tssr133665	transcription start site region 133665	1617 bp downstream
Tssr133666	transcription start site region 133666	1834 bp downstream
Tssr133667	transcription start site region 133667	1848 bp downstream