rs239484976 SNP Detail

Summary

• ID
  rs239484976
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:91032507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGACAGT ATCAATTCTG
  ATCAGATTTG CATTAAAGCA TATCAAGGGC CCAAGATCTC ATCTGCAACT GTGTGTCACT
  CTAAGGTTTG GAATCACAAC ATCCAGACAC CCAACTGGCT GCCTGCCTCC AAATCCTAAA
  GGCTAATGTC TGGAGGAACT CTGATTCTGT GGCAATTCCA GTTATATGCC TGCATCAAAA
  Y
  TGATGTAGTT TTCTGAGATT CCTCCCATAA GAATTCAATG TAGTGGGTTT GGGAAATCGG
  AACATCCTAT GCAATCCAAC TCCTCCTCAA ACATGACGTT TGAGTCTAAT TTAATTTAGA
  AATCGGTAAG CACAAGAAAA GAGCTGAAAA AAACTGGGGA GTACGAAGGT TTGTTCAGGA
  CATGAATGGC AGACTAGACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354809600	MGP_WTSI_2_91042319	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239484976					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354809600	MGP_WTSI_2_91042319	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91032507 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Acp2	acid phosphatase 2, lysosomal			723 bp upstream
Cpgi11901	CpG island 11901			429 bp proximal
Gm13783	predicted gene 13783			within coordinates
Gm23390	predicted gene, 23390			1895 bp downstream
Nr1h3	nuclear receptor subfamily 1, group H, member 3			Intron
				Noncoding-Transcript-Variant
Rr367226	regulatory region 367226			559 bp upstream
Rr560670	regulatory region 560670			34 bp proximal
Rr560671	regulatory region 560671			606 bp proximal
Rr560672	regulatory region 560672			654 bp proximal
Tssr18869	transcription start site region 18869			630 bp upstream
Tssr18870	transcription start site region 18870			741 bp upstream
Tssr18871	transcription start site region 18871			1096 bp upstream
Tssr25175	transcription start site region 25175			481 bp downstream