rs239499065 SNP Detail

Summary

• ID
  rs239499065
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135661649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gtgctgagg ttatacacat gtgctccttt
  gcccaacAGC AATGATTTGT TCACCTAGGG CCATATACCA GAAAGTCTGA AGAAAGATCT
  AGGTCCTTGA TGGGAGCTGC AGGTGGCCAG GGGGTACTGG AGAACTAGAC TCTAAGGAAA
  Y
  AGCTTGTCAT AGACTCATCC AGCTTGGTTG GCAGGCAGGT CAGGGGATCC TTGTCCCTTC
  TTGGCATGTT GCATCTTAAG TCTTGCTTCT TCCAGACATA GATCAGTAGG GAAGGAAAGT
  GGTCAGGCAT TTGTCCCCAC ATCTGACAGG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319992803	CHEV_1_137630488	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239499065					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135661649 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Csrp1	cysteine and glycine-rich protein 1			Intron
				Noncoding-Transcript-Variant
Rr419257	regulatory region 419257			765 bp distal
Rr419258	regulatory region 419258			124 bp proximal