rs239506131 SNP Detail

Summary

• ID
  rs239506131
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:56483045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTCTCTT TATTTCTCAT
  ATTTCACGTT TTTCAGTGTT TGTCACCATA TTCCAGGTCA AACAGTGTTT GTGTCTCATT
  TTCCACGTTT TTCAGTTTTC TATCCATATT CCAGGTCCTA TACTGTGCAT TTCTCATTTT
  TCACATTTTT CAGTGTTTCT CTCCATATTC CAGGTCCTAC AGTGTGTGTG TCTCATTTTA
  T
  ATATTTTTCA GTTTTTTCAC CATATTCCAG GTCCTACAAT GTGCATTTCA CATTTTTCAC
  GTTTTTCAGT GTTTCTCGCC ATATTTCAGG TCCTACAGTG TGTGTTTCTC ATTTTCCATG
  ATTTTCTCTC TCTCTCTCTC TCTCTCTCTC TCGCTCCCTC TTGCTCTTGC TCTTTCTCTC
  CCTCTCTCTT TTTAATTATT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	LEWES/EiJ
ss358056348	MGP_WTSI_3_56379546	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	LEWES/EiJ
rs239506131					SNP	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358056348	MGP_WTSI_3_56379546	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:56483045 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13194	CpG island 13194	within coordinates
Rr577050	regulatory region 577050	within coordinates
Tssr29179	transcription start site region 29179	87 bp downstream
Tssr29180	transcription start site region 29180	36 bp upstream
Tssr29181	transcription start site region 29181	66 bp upstream