rs239507241 SNP Detail

Summary

• ID
  rs239507241
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:30209137 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTCTGACC CTCTTATGCA
  CACCTCTTAA ACAGTGGGTC TCCCCCTGGC CTGCCTGTAC TTCCTCATTC CTCAACTCGT
  GGCAAACTAA CCACACACAC ACACACACAC ACACAGAGAG AGAGAGAGAG AGAGAGAGAG
  AGAGAGAGCT CAACTGACAG TAACCCTTGA CCTTGTCATC CACCATTGCA GAACTGTCCT
  M
  GGTACTACCT CTCAGCATCT CTCTGCCACA TTTGACACTG TGGGTGTTCT CACCTTCTGA
  AATTACTCTA CTGCCTCAGC TTGCAAAGGA TTTTGCTCTC CCAGTTGTCA AGTCTCTGTA
  ACTAAGACCT CTCTGCCTTC CTCCGTGGCA CCAGTTGTGA AGCAGCACCT GAAATGCAGG
  GCAGCACCTA AGCCCCACAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325129946	CHEV_16_30390405	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239507241					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:30209137 () rs orientation: forward

Symbol	Name	Function Class
Atp13a3	ATPase type 13A3	1463 bp upstream
Cpgi8159	CpG island 8159	792 bp distal
Gm61087	predicted gene, 61087	233 bp downstream
Gm61089	predicted gene, 61089	611 bp upstream
Rr370076	regulatory region 370076	789 bp downstream
Rr514223	regulatory region 514223	1800 bp distal
Rr514224	regulatory region 514224	1430 bp distal
Rr514225	regulatory region 514225	1421 bp distal
Rr514226	regulatory region 514226	622 bp distal
Rr514227	regulatory region 514227	121 bp distal
Tssr140714	transcription start site region 140714	1618 bp upstream
Tssr140715	transcription start site region 140715	1517 bp upstream
Tssr140716	transcription start site region 140716	1461 bp upstream
Tssr140717	transcription start site region 140717	971 bp upstream