rs239507923 SNP Detail

Summary

• ID
  rs239507923
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30254317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCGATCTG ACTCCACTGC
  CCAGCCAGAT GTCCCAATCG CCGTCAAGAC AGCCTTTCCC AACCACACCT AGATGTCCTT
  CGGAGACCTT TCCACCCCTA AGCCTACCTG AGCCCTAGTA ACCTAGACAG CCTCCCTAAG
  CCCTCTCCCA GCTTTCCGGC CCGACCCAGG ACACCTCTCT AGGGACGCTA CTGTCACCCC
  W
  CAGTCAAGGC TCCCATCAAA TTGACCCCAC TTTGGGCTTC TATCACCACG CAGGCCTCCT
  ACCGCACTTG TAACCTGTGT AGAATACCCC AAGGTGACAC CAGAGTACAG TGTAGTCACC
  TAATTCTCCA CATGGAGAAA CTGCATGGGC TTTCCACATC AGAACATCCA AGCCTAGTCC
  ACCAGTCCTA CCCACTAGTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370910124	MGP_WTSI_7_31339911	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239507923					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370910124	MGP_WTSI_7_31339911	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30254317 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18809	CpG island 18809	1358 bp distal
Cpgi18810	CpG island 18810	295 bp distal
Hspb6	heat shock protein, alpha-crystallin-related, B6	within coordinates
Lin37	lin-37 DREAM MuvB core complex component	549 bp downstream
Mir9769	microRNA 9769	1988 bp downstream
Tssr65780	transcription start site region 65780	1620 bp downstream
Tssr65781	transcription start site region 65781	1583 bp downstream
Tssr65782	transcription start site region 65782	98 bp downstream
Tssr65783	transcription start site region 65783	32 bp downstream
Tssr65784	transcription start site region 65784	8 bp downstream
Tssr65785	transcription start site region 65785	31 bp upstream
Tssr65786	transcription start site region 65786	49 bp upstream
Tssr65787	transcription start site region 65787	143 bp upstream
Tssr71789	transcription start site region 71789	204 bp upstream
Tssr71790	transcription start site region 71790	62 bp upstream