rs239508162 SNP Detail

Summary

• ID
  rs239508162
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128203781 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTATGTGAG AGCCTGTCTC
  AAAATGTGTG TGTGTGAGAT ACCTATGATG CAGCTCTGGC TATGTAGTCC GTGGAAGCTT
  CAAGCTTAGA TTACAGGCTG TACTACCTAG TCGGTTACCT TTCTATGATG TAACACAATT
  CTAGACTAAT ACACGTGCAG AACAACTAAG GTGGGAAATT TAGGTTGAAA GGCTGGCAGC
  R
  AAAACGTTGC TGGGGAGACA AGTGGCCCAA TATGAATCTT ACCCACTACT GGTACATGGT
  TATTTATTTG AAGGGGAAAA AAAGGAATGC TCACCCCATG ATCCTACGCT CCGAGTAAGC
  CTTTCGCTTG TTGGTAAAGG GGGCAGCAAA GCCCATGAAG GAACGACTAT GAGGTAGGCC
  AGCCTCCGCT GCCAAGGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323533359	CHEV_10_127804968	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239508162					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128203781 () rs orientation: forward

Symbol	Name	Function Class
Coq10a	coenzyme Q10A	within coordinates
Cpgi2395	CpG island 2395	171 bp proximal
Rr224459	regulatory region 224459	within coordinates
Rr369103	regulatory region 369103	1049 bp upstream
Tssr99854	transcription start site region 99854	764 bp downstream
Tssr99855	transcription start site region 99855	978 bp downstream
Tssr99856	transcription start site region 99856	1031 bp downstream
Tssr99857	transcription start site region 99857	1170 bp downstream
Tssr99858	transcription start site region 99858	1210 bp downstream