rs239512405 SNP Detail

Summary

• ID
  rs239512405
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149984277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    aaATCTAGG TTGTCCCTTA ATGAAATGGT
  TCTGCTCTTG CTTACATGGG TTCTAACAAG AGTCAGAACT TATTACCTCA GTTGCTGAAG
  AACTGTTAAA ATATGTGCTA TGTACTACAG AGACATCAAA AGCATGTTTA AAAAGAAAAA
  R
  GAAAAACATG TTAagcaggg tgtggtggca cacaccttta atcccagcac tcaggaggca
  gaggcaggtg gatttctgag ttcgaggcca gcctgatcta caaagtgagt tccaggacag
  ccagggctat acagagaaac cctgtcttga                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320045561	CHEV_1_151955656	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239512405					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149984277 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	299 bp downstream
Tssr9288	transcription start site region 9288	1927 bp downstream
Tssr9289	transcription start site region 9289	1910 bp downstream
Tssr9290	transcription start site region 9290	1756 bp downstream
Tssr9291	transcription start site region 9291	1708 bp downstream
Tssr9292	transcription start site region 9292	1580 bp downstream
Tssr9293	transcription start site region 9293	1564 bp downstream
Tssr9294	transcription start site region 9294	1541 bp downstream
Tssr9295	transcription start site region 9295	1514 bp downstream
Tssr9296	transcription start site region 9296	1502 bp downstream
Tssr9297	transcription start site region 9297	1489 bp downstream
Tssr9298	transcription start site region 9298	1463 bp downstream
Tssr9299	transcription start site region 9299	1445 bp downstream
Tssr9300	transcription start site region 9300	1426 bp downstream
Tssr9301	transcription start site region 9301	1293 bp downstream
Tssr9302	transcription start site region 9302	1269 bp downstream
Tssr9303	transcription start site region 9303	1193 bp downstream
Tssr9304	transcription start site region 9304	1173 bp downstream
Tssr9305	transcription start site region 9305	1164 bp downstream
Tssr9306	transcription start site region 9306	1152 bp downstream
Tssr9307	transcription start site region 9307	1126 bp downstream
Tssr9308	transcription start site region 9308	1109 bp downstream
Tssr9309	transcription start site region 9309	1087 bp downstream
Tssr9310	transcription start site region 9310	1062 bp downstream
Tssr9311	transcription start site region 9311	1039 bp downstream
Tssr9312	transcription start site region 9312	1021 bp downstream
Tssr9313	transcription start site region 9313	1013 bp downstream
Tssr9314	transcription start site region 9314	994 bp downstream
Tssr9315	transcription start site region 9315	902 bp downstream
Tssr9316	transcription start site region 9316	717 bp downstream
Tssr9317	transcription start site region 9317	431 bp downstream
Tssr9318	transcription start site region 9318	278 bp upstream