rs239520826 SNP Detail

Summary

• ID
  rs239520826
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:98830607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAATGGGA GTACAAGACC
  TCACTGTAGC TCTCACGAAC ACAATCCAAA GTCAGGAAGG ACATAGTCAA ACACAGAAAA
  CTTTCAAACA TATTCTGCCA TTCACATTCA TGATCCTCTG ACGGAGCTCA CAGCTGCAAG
  ACCAAGATCA TCTTGCCAGG CTCGTGGGTA AGGAAGGTGA GTTTGGGTGA TGGAAGGAGA
  Y
  GGGTGACATT GCTGTCCTAG GAAGTGCTTT TCCCAGGGAG AGTGTGATAG AATCAGAAGG
  AAGTGGAGAA AAAAAAAAGA AGAAGAAGAA GAAGAAGAAG AAGACGCAGA GGAGTGAAGG
  ATGCATTTCT CTCAAACTTG CAAAAGCCAC ATTTCATGGT GATGCTAAGA TGGAAGACTT
  AAAGCATCCT GCTAATTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss389656828	MGP_WTSI_13_99464054	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239520826					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389656828	MGP_WTSI_13_99464054	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:98830607 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6012	CpG island 6012	599 bp proximal
Rr281821	regulatory region 281821	within coordinates
Tmem171	transmembrane protein 171	within coordinates
Tssr120815	transcription start site region 120815	1777 bp downstream
Tssr123632	transcription start site region 123632	1914 bp upstream
Tssr123633	transcription start site region 123633	1882 bp upstream
Tssr123634	transcription start site region 123634	1374 bp upstream
Tssr123635	transcription start site region 123635	1365 bp upstream
Tssr123636	transcription start site region 123636	1312 bp upstream
Tssr123637	transcription start site region 123637	1292 bp upstream
Tssr123638	transcription start site region 123638	954 bp upstream
Tssr123639	transcription start site region 123639	670 bp downstream
Tssr123640	transcription start site region 123640	707 bp downstream
Tssr123641	transcription start site region 123641	726 bp downstream
Tssr123642	transcription start site region 123642	794 bp downstream
Tssr123643	transcription start site region 123643	925 bp downstream
Tssr123644	transcription start site region 123644	1461 bp downstream
Tssr123645	transcription start site region 123645	1585 bp downstream