rs239525600 SNP Detail

Summary

• ID
  rs239525600
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:118408041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATGGACA CAAATTCAGG
  GGAGATTTGC ACTGGCTTCC TGGCGTTAGC CAGGGGTACC CTCCACTGGG AAGACAGCTC
  CTGCTATATG GGAAGTGGGG TCCCTAGGAG TAGCAGGTTA GGTGTTTGCC CTGAAATTGG
  CCTGGGATTG GGACTATTGT TTAAGCAAAA GTTTACACTA AAAAGGTTTT TTTTTTTTTA
  G
  AAAAAAAAAA GACATTATTC ATTATTTTTA GTTGTGTGTG TGTGTACAAG TGCAGGTTCC
  CACGGAGGTT AGAGGCCCTG GAGGCCCTGG AGCTAAGTCC CAGACAGTTT TTAGCCACCT
  GACATAGGCA CTAGGAATAG AAACTGGGTC CTCTTCTACT CTTGACCACT GGACCTTCTC
  TCCAGCCTCC TTTTCTATCC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	FVB/NJ	I/LnJ	LEWES/EiJ	MA/MyJ	NOD/ShiLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SWR/J
ss366427349	MGP_WTSI_5_118719985	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	FVB/NJ	I/LnJ	LEWES/EiJ	MA/MyJ	NOD/ShiLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SWR/J
rs239525600					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366427349	MGP_WTSI_5_118719985	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:118408041 () rs orientation: forward

Symbol	Name	Function Class
Gm73266	predicted gene, 73266	within coordinates
Rr618848	regulatory region 618848	712 bp distal
Rr618849	regulatory region 618849	761 bp distal
Rr618850	regulatory region 618850	252 bp distal