rs239527222 SNP Detail

Summary

• ID
  rs239527222
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:18709978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAATGATC AGCGCTCATC
  TCCAGTGCAG GGCCTCTATA TTTCTGGTTG GTTCCGTTTG GCTCCAAGGA AAGCAGGAAT
  AGGTTATATC TGTTTGGGAT CATTTTGGTG ATCAGTGACA GAACTCTGTG ACCTGTGACC
  AAAATAACCA GAATTAAAAG ATATACAATA TAATATAATG CCATATACTA TAATAATATG
  R
  TATGAATATG TATAAAAACA GAAAACAGGA AGGAGATTAT TATTTGGGGA GGAAGGAGCA
  TAAGGAAGAA GGGAGAGAGT ATGAGCAAAG TACAAAATGA TAAATGTGCA TATGAACGTG
  TCATGAATAC TTACCTGACA GGGGAGATTC CATGATCACG AAGGTGGTTT TCCCAGGGCG
  AGGCTTATCC ATTGCACTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401924989	MGP_WTSI_19_18807104	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	G	G	G	A	G	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239527222					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	G	G	G	A	G	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401924989	MGP_WTSI_19_18807104	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:18709978 () rs orientation: forward

Symbol	Name	Function Class
Gm23238	predicted gene, 23238	127 bp upstream
Gm50202	predicted gene, 50202	within coordinates
Gm59201	predicted gene, 59201	1249 bp upstream
Rr544949	regulatory region 544949	1260 bp distal
Rr544950	regulatory region 544950	1159 bp distal
Rr544951	regulatory region 544951	108 bp proximal
Tssr155454	transcription start site region 155454	1997 bp downstream
Tssr155455	transcription start site region 155455	1965 bp downstream
Tssr155456	transcription start site region 155456	1925 bp downstream
Tssr155457	transcription start site region 155457	1174 bp downstream
Tssr155458	transcription start site region 155458	126 bp upstream