rs239527614 SNP Detail

Summary

• ID
  rs239527614
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:12474463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTATATT ACTTTACGGA
  TAGTTACCAA ATAAGTGTTA GTATAACCAA AGTCCTACCA TATAGTCTTC ATAACATACT
  TAGAAATGAA ATAATTTTTT TTTTCTGAGA CAGGGTTTCT CTATGTAGCC CTGGCTATCC
  TGGAACTCAC TCTGTAGACC AGGCTGGCCT TGAACTCAGA AATTTGCCTG CCTCTGCATT
  Y
  CAAGCGCTGG GATTAAAGGC ATGTGCCACC ATGCCTGGCC TTAAATGAAA TAATTTTAAG
  TGATCAGTGC AGGAATTATT TAAAAAATAT GTAAGGAGGA AATTACATGA AGTTTCCTGT
  TAAAAATACT AAAACTGTAA GTGTGGTGGC ACAATACCTG TGATCGAAGC CACTTGTGAG
  CAAGCCTGCG ACAGGAAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387758730	MGP_WTSI_13_12551849	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239527614					SNP	T	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387758730	MGP_WTSI_13_12551849	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:12474463 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5278	CpG island 5278	1377 bp proximal
Lgals8	lectin, galactose binding, soluble 8	within coordinates
Rr281011	regulatory region 281011	337 bp proximal
Rr369646	regulatory region 369646	1001 bp upstream
Rr369647	regulatory region 369647	1567 bp upstream
Tssr118345	transcription start site region 118345	1088 bp upstream
Tssr121451	transcription start site region 121451	456 bp upstream
Tssr121452	transcription start site region 121452	300 bp upstream
Tssr121453	transcription start site region 121453	1517 bp downstream
Tssr121454	transcription start site region 121454	1828 bp downstream
Tssr121455	transcription start site region 121455	1850 bp downstream
Tssr121456	transcription start site region 121456	1956 bp downstream
Tssr121457	transcription start site region 121457	1980 bp downstream