rs239531438 SNP Detail

Summary

• ID
  rs239531438
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58894381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGCACCAT CAGGATGTTG
  GGGGGCTGTC AGACAGAGTT GAGAAGTTGT TCAAGGCTAC ACTTCATGAA AAAGGTAACT
  CCTACCCTCT GGGCCTAGGA GAGCACTGAA GAGTCCTTGA GGCTAGTAAA GGGCAGTGGG
  GAGTCCCCAG GACCGAGAGG GGAATCACAT CTACTCCATG AGAGCCAAAC CCTACCCGAG
  R
  TAGTAGAAAC CAAGCACAGG CTGGCTCCCA GCTGTGCCCA CCACGAGTTC TGGGGATGCC
  GTGAATGCAA TACCTTTATG TCCAGGTGGA GGATACCATG GCTGTGCAAA TAGTGTAGGC
  CTTCCACCAG CTGCTGGATA TAGACTTTGA CCTGTGGAAA ATGCCAGGAT CAGTTTGGAA
  CCAGCCCCCA AGAGGCTGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323695611	CHEV_11_58817057	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239531438					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58894381 () rs orientation: forward

Symbol	Name	Function Class
Gm10435	predicted gene 10435	within coordinates
Obscn	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	within coordinates
Rr448071	regulatory region 448071	635 bp distal
Tssr101782	transcription start site region 101782	605 bp downstream
Tssr101783	transcription start site region 101783	586 bp downstream
Tssr101784	transcription start site region 101784	574 bp downstream
Tssr108189	transcription start site region 108189	1362 bp upstream
Tssr108190	transcription start site region 108190	1324 bp upstream
Tssr108191	transcription start site region 108191	1189 bp upstream
Tssr108192	transcription start site region 108192	1170 bp upstream
Tssr108193	transcription start site region 108193	1154 bp upstream
Tssr108194	transcription start site region 108194	1106 bp upstream