rs239537691 SNP Detail

Summary

• ID
  rs239537691
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149983367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             ATGATGAGAT TAACGTTCAT GGATAAATTC TAAGAAAACT AGTGTATTTT
  W
  TTGAAAAGTT TGAAGTTAGA ACTTAGGCTG TTGGAATTTA CGCATAAAGC           
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320045555	CHEV_1_151954746	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239537691					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149983367 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Tssr9277	transcription start site region 9277	1960 bp downstream
Tssr9278	transcription start site region 9278	1939 bp downstream
Tssr9279	transcription start site region 9279	1921 bp downstream
Tssr9280	transcription start site region 9280	1821 bp downstream
Tssr9281	transcription start site region 9281	1801 bp downstream
Tssr9282	transcription start site region 9282	1767 bp downstream
Tssr9283	transcription start site region 9283	1752 bp downstream
Tssr9284	transcription start site region 9284	1740 bp downstream
Tssr9285	transcription start site region 9285	1726 bp downstream
Tssr9286	transcription start site region 9286	1647 bp downstream
Tssr9287	transcription start site region 9287	1131 bp downstream
Tssr9288	transcription start site region 9288	1017 bp downstream
Tssr9289	transcription start site region 9289	1000 bp downstream
Tssr9290	transcription start site region 9290	846 bp downstream
Tssr9291	transcription start site region 9291	798 bp downstream
Tssr9292	transcription start site region 9292	670 bp downstream
Tssr9293	transcription start site region 9293	654 bp downstream
Tssr9294	transcription start site region 9294	631 bp downstream
Tssr9295	transcription start site region 9295	604 bp downstream
Tssr9296	transcription start site region 9296	592 bp downstream
Tssr9297	transcription start site region 9297	579 bp downstream
Tssr9298	transcription start site region 9298	553 bp downstream
Tssr9299	transcription start site region 9299	535 bp downstream
Tssr9300	transcription start site region 9300	516 bp downstream
Tssr9301	transcription start site region 9301	383 bp downstream
Tssr9302	transcription start site region 9302	359 bp downstream
Tssr9303	transcription start site region 9303	283 bp downstream
Tssr9304	transcription start site region 9304	263 bp downstream
Tssr9305	transcription start site region 9305	254 bp downstream
Tssr9306	transcription start site region 9306	242 bp downstream
Tssr9307	transcription start site region 9307	216 bp downstream
Tssr9308	transcription start site region 9308	199 bp downstream
Tssr9309	transcription start site region 9309	177 bp downstream
Tssr9310	transcription start site region 9310	152 bp downstream
Tssr9311	transcription start site region 9311	129 bp downstream
Tssr9312	transcription start site region 9312	111 bp downstream
Tssr9313	transcription start site region 9313	103 bp downstream
Tssr9314	transcription start site region 9314	84 bp downstream
Tssr9315	transcription start site region 9315	within coordinates
Tssr9316	transcription start site region 9316	182 bp upstream
Tssr9317	transcription start site region 9317	459 bp upstream
Tssr9318	transcription start site region 9318	1188 bp upstream