rs239541090 SNP Detail

Summary

• ID
  rs239541090
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:116610851 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTACACTGC GATTCATACA
  TAACAGTAGC AGAATTACAG TTGCGAAGCA GCAACAAAAG TAATTATTAT GGTCGGGAGG
  TCTTCACACC ATGAGGAAGT GTATTAAAGG ATTGGAGCAT TAGGAAGGTT GAGCCCCACA
  CAACCTAGAG TGTGTAGCTC CAGATGAGGA CTTTACTAGG GGACTCAACA CTGCTCAAGA
  R
  CGGATGGAGG CAACACAGTG GCCCAGAAGC AGCCCCGATA CACACGCTCC CACCGTCACT
  CTGCTTCAAT AGCATGTCCC AAGGAGTCCG GGGATCCAGG ATCGATCAGA ACACACCATG
  GGTACTATAT AGTCCCACAG TTTCTGAGAG ATGTATAGTC TCCTGTGATG CTGAGATTTC
  TGGCCTTGTT ATGGCAATAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369777226	MGP_WTSI_6_116583908	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239541090					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369777226	MGP_WTSI_6_116583908	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116610851 () rs orientation: forward

Symbol	Name	Function Class
Gm44154	predicted gene, 44154	945 bp downstream
Rassf4	Ras association (RalGDS/AF-6) domain family member 4	within coordinates
Rr132438	regulatory region 132438	1251 bp distal
Rr147141	regulatory region 147141	151 bp proximal
Rr151415	regulatory region 151415	1326 bp distal
Tssr62571	transcription start site region 62571	574 bp upstream
Tssr62572	transcription start site region 62572	535 bp upstream
Tssr62573	transcription start site region 62573	475 bp upstream
Tssr62574	transcription start site region 62574	295 bp upstream
Tssr62575	transcription start site region 62575	62 bp upstream
Tssr62576	transcription start site region 62576	1052 bp downstream