rs239541148 SNP Detail

Summary

• ID
  rs239541148
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24913151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTTCACCGA GCCATTGAAG AATTTGAATC
  CAGCCTTAAG GAAGCTAAAA TTAGTGAGAT TCAGATGACA GCGCCTCTGA AACTCTCTTA
  CACAGATAAG TTGCACAGAT TAGAGAGTCA GTACGCTAAA CTCTTGAATA CATCCAGAAA
  Y
  CAACTACAGA AACAAGTGTT GGCTCAGATG CACTTTAATC GTCAATCAGG CTGTTGCCCA
  TAGAACCAGG CTAGATGCCC CTCACGAACT GCTGGTAATC TTCTAGTCAC AGGAGCCGTC
  CTTCCAGCCG TCACGCCAAC GCTCATCTAC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325333060	CHEV_17_24831122	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239541148					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24913151 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8739	CpG island 8739	1427 bp proximal
Gfer	growth factor, augmenter of liver regeneration	within coordinates
Rr523392	regulatory region 523392	1519 bp proximal
Rr523393	regulatory region 523393	1881 bp proximal
Tssr146764	transcription start site region 146764	1810 bp downstream
Tssr146765	transcription start site region 146765	1888 bp downstream
Tssr146766	transcription start site region 146766	1944 bp downstream
Tssr146767	transcription start site region 146767	1970 bp downstream