rs239546110 SNP Detail

Summary

• ID
  rs239546110
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75413059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGTCAGC ACTCACTCTT
  TCCCCTGAAG AAGGCTATGC AGGCCATCTG TGGAGCTCTT CTCTAGAACC CTGAGTGGGG
  GCTATTCCCA AAAGTGGAGG CTAACAGCAT TTAACTGCTG TATCATGCAG CCAATCTTAT
  ATGAACAATG CCTAGATGCT TCTCTGTACA AAGTCAAGGG CCCCTGAGTT CCCTCTGCCA
  S
  TTACTAACTG GGATTCTACT CACCACGTCA CTCTTACCAG GGACATCTGA AGACAGCCGT
  CAGTTCTTAC TAGAACCATT CCTAGAATGT TCTTTAGGAC CAGATCTAGA GAAGACCGAA
  CCTTCTCCAT GTCTTCCCGT GCTCTAGCAG ACCCTCTTTC TCAATAGGAG CCCTGTGGGT
  TTCTGAGTAA AAAGTTGCCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391577233	MGP_WTSI_14_75575426	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239546110					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391577233	MGP_WTSI_14_75575426	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75413059 () rs orientation: forward

Symbol	Name	Function Class
Lcp1	lymphocyte cytosolic protein 1	within coordinates
Rr404213	regulatory region 404213	1063 bp upstream
Rr495436	regulatory region 495436	214 bp distal
Tssr4478	transcription start site region 4478	667 bp downstream
Tssr126621	transcription start site region 126621	641 bp downstream
Tssr126622	transcription start site region 126622	611 bp downstream
Tssr126623	transcription start site region 126623	970 bp upstream
Tssr126624	transcription start site region 126624	1014 bp upstream
Tssr126625	transcription start site region 126625	1173 bp upstream
Tssr126626	transcription start site region 126626	1188 bp upstream
Tssr126627	transcription start site region 126627	1204 bp upstream
Tssr126628	transcription start site region 126628	1515 bp upstream
Tssr129768	transcription start site region 129768	812 bp upstream
Tssr129769	transcription start site region 129769	961 bp downstream
Tssr129770	transcription start site region 129770	1030 bp downstream