rs239553032 SNP Detail

Summary

• ID
  rs239553032
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:55066641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGCCGCG GCTGGCTGGC
  TGCCGAGGTC GCGCGTGGGA AGGGAAAGGC CGCTTACCTT CGTGAGTCTT GGCGATCTTC
  GCCATTTTGT CCACTCGAAC ACACAGACGG AACTGGCGCT CCCAAGGACT TCCGCTCGCC
  GCCGCCAGAA ACAGAGGCCG CTCTCTGAGC GTGCGCACCC GGGAGCGCGC GCCGCACTGT
  R
  GCACGTACTT CAACTGCCAC CTATATGAGA CTGCGAGGGG CATTATGGGA GTGGGCGGGG
  CCAGGGCGGG CTCCCGGCGG CTTCCTTAAA AAGCCAGCGA AACCGCGGGG AAGACTAAAC
  GCGGAAGAGG ATGGCTACTT CCCAAGAGGG CTGTAGCCTG TCCGGCCAGT GGTGGGTAAC
  GTGCCGTTAA TTCAAGCACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349691876	MGP_WTSI_1_55084326	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239553032					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349691876	MGP_WTSI_1_55084326	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:55066641 () rs orientation: forward

Symbol	Name	Function Class
Cpgi259	CpG island 259	within coordinates
Gm71172	predicted gene, 71172	within coordinates
Rr371303	regulatory region 371303	within coordinates
Rr411122	regulatory region 411122	1638 bp distal
Rr411123	regulatory region 411123	418 bp distal
Rr411124	regulatory region 411124	12 bp distal
Rr411125	regulatory region 411125	within coordinates
Rr411126	regulatory region 411126	36 bp proximal
Rr411127	regulatory region 411127	1360 bp proximal
Sf3b1	splicing factor 3b, subunit 1	1 bp upstream
Tssr6707	transcription start site region 6707	1106 bp downstream
Tssr6708	transcription start site region 6708	115 bp upstream
Tssr11708	transcription start site region 11708	76 bp upstream
Tssr11709	transcription start site region 11709	within coordinates