rs239563323 SNP Detail

Summary

• ID
  rs239563323
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:168607441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCACCAC CAGCTAAATA
  GGAGAAAAAA ACAAAACAAA AAACACTAGT ATGCGCTCAC CCCAAATGGA GGGGGAAGGG
  AGGTCATCGC AGGACCAGGG GAGGGGTCAG GGCCGAGAGC TCGCCCCTCC TCTCCAGAGG
  AAGCAGGCGG GCTGAGGGTT AACCCTTTTG TTCCAGGTGG ACCAAGCGAC CCAGCCTCTC
  M
  ATGATCTGCA CCCCCACCCC TAGCTCCCCG GGCCAAGGCA CAAAGAGTCC ATCCCAGCTG
  CCCGGCCCTA TGATGTGGGA TGCTCCAACG CCCCAAAACT CACATCCGCC CCCTCGAACA
  AGCAATGACC TTCCAGTTGC CCTGGGGGGC AGGGGGGGGG GATACAATGA GGTAGAAGGT
  CACTGAACTT TGATAAACTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356535954	MGP_WTSI_2_168591021	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239563323					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356535954	MGP_WTSI_2_168591021	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:168607441 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12778	CpG island 12778	within coordinates
Gm14261	predicted gene 14261	622 bp upstream
Rr40858	regulatory region 40858	441 bp distal
Rr56145	regulatory region 56145	within coordinates
Rr374246	regulatory region 374246	within coordinates
Sall4	spalt like transcription factor 4	within coordinates
Tssr21880	transcription start site region 21880	620 bp upstream
Tssr21881	transcription start site region 21881	1023 bp upstream
Tssr27872	transcription start site region 27872	713 bp upstream
Tssr27873	transcription start site region 27873	260 bp upstream
Tssr27874	transcription start site region 27874	206 bp upstream
Tssr27875	transcription start site region 27875	160 bp upstream
Tssr27876	transcription start site region 27876	80 bp upstream
Tssr27877	transcription start site region 27877	1120 bp downstream
Tssr27878	transcription start site region 27878	1515 bp downstream
Tssr27879	transcription start site region 27879	1541 bp downstream
Tssr27880	transcription start site region 27880	1555 bp downstream
Tssr27881	transcription start site region 27881	1570 bp downstream
Tssr27882	transcription start site region 27882	1615 bp downstream
Tssr27883	transcription start site region 27883	1638 bp downstream
Tssr27884	transcription start site region 27884	1669 bp downstream
Tssr27885	transcription start site region 27885	1765 bp downstream