rs239569201 SNP Detail

Summary

• ID
  rs239569201
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:181222545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCCATCCC GGTGCTACTG
  TGGAATTCCT GCAAGAGGCA GAAGGCGGTT CAGAGTCATC AAAGCCATTT TTACAAGGTA
  GACATAGGAC TGGGGGATTA AAGGCTTTCA TGGCCTCACT TGCCAACCTG CCTCCCCCCC
  CCCCCCCCAA GGCTCTGGGT GAGTACCTAT TAACTTCTCT CCACTCTCTA ATCCCAAATC
  M
  ATCTCCACTT TGCATATCGA CATGAAAGCC AATGGCGGTG CTGGCTAAGG TCAGACAACT
  CCAAGGAAAA GGCCTCAGGG GCAGGCAGAT AGGGAGCCAG GTGCTGGGAA AGGCAATAGG
  AGAAACCTCA AGCTGGGCTT TAGTCTACCA GCGACTCCCT CCCCTACTGC TGCCAGTGCC
  TGAGGCACCA GGGCAGTTTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356781060	MGP_WTSI_2_181315457	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239569201					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356781060	MGP_WTSI_2_181315457	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181222545 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12930	CpG island 12930	342 bp proximal
Rr397593	regulatory region 397593	334 bp upstream
Rr573036	regulatory region 573036	1691 bp distal
Rr573037	regulatory region 573037	1253 bp distal
Rr573038	regulatory region 573038	within coordinates
Rr573039	regulatory region 573039	464 bp proximal
Rr573040	regulatory region 573040	1246 bp proximal
Rr573041	regulatory region 573041	1751 bp proximal
Tssr22326	transcription start site region 22326	1413 bp downstream
Tssr22327	transcription start site region 22327	1385 bp downstream
Tssr22328	transcription start site region 22328	1227 bp downstream
Tssr22329	transcription start site region 22329	1199 bp downstream
Tssr22330	transcription start site region 22330	1185 bp downstream
Tssr28212	transcription start site region 28212	1806 bp upstream
Tssr28213	transcription start site region 28213	378 bp downstream
Tssr28214	transcription start site region 28214	1148 bp downstream
Tssr28215	transcription start site region 28215	1222 bp downstream
Tssr28216	transcription start site region 28216	1244 bp downstream
Uckl1	uridine-cytidine kinase 1-like 1	within coordinates
Uckl1os	uridine-cytidine kinase 1-like 1, opposite strand	within coordinates
Zfp512b	zinc finger protein 512B	1380 bp downstream