rs239573525 SNP Detail

Summary

• ID
  rs239573525
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:78700657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGAGATCTG TTATTTACAG
  TTGTCATATG TTATTAATGC CCGTTGCCCA AGTTCCCTGG CAAATCTGTT TCATGCCTTC
  TGAGAAAGTA GACAATTGAT AGATTGTCCA AGGGATGGGA AAAAAATGTG AGTGGGTTTT
  CCAACTTGCA TTTTGGTAAA TCCCTCAACG CCTGCATTAT AAATTATGAT ACGTATCAGA
  Y
  TCCCTGTAAC GTGCTGCACC CTAAGTACAG GGACTTTCGA ATCCTTTTCA ATAAAATACT
  CTCAAAGGTG CTTATTGAGA AGTGCATGCT GCTATTTTTT TTTAAAGATC TAATGTTTCT
  CCATGGGTCT CTTCTCTCCT TAGAAGTTTT CCCAGAGATA AGTTCACCAA GATGTCCAGT
  GACAGGCAAA GGTCGGATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354575698	MGP_WTSI_2_78710470	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239573525					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354575698	MGP_WTSI_2_78710470	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:78700657 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11839	CpG island 11839			358 bp distal
Rr559887	regulatory region 559887			1256 bp distal
Rr559888	regulatory region 559888			1381 bp distal
Rr559889	regulatory region 559889			625 bp distal
Rr559890	regulatory region 559890			1098 bp distal
Rr559891	regulatory region 559891			1694 bp proximal
Tssr18521	transcription start site region 18521			1557 bp downstream
Tssr18522	transcription start site region 18522			1505 bp downstream
Tssr18523	transcription start site region 18523			1204 bp downstream
Tssr18524	transcription start site region 18524			1171 bp downstream
Tssr18525	transcription start site region 18525			1150 bp downstream
Tssr18526	transcription start site region 18526			1051 bp downstream
Tssr18527	transcription start site region 18527			992 bp downstream
Tssr18528	transcription start site region 18528			937 bp downstream
Tssr18529	transcription start site region 18529			802 bp downstream
Ube2e3	ubiquitin-conjugating enzyme E2E 3			Intron
				Noncoding-Transcript-Variant