rs239578044 SNP Detail

Summary

• ID
  rs239578044
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:51727894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCGCACGC CTTTAATCCT
  AGCACTTGGG AGGCAGAGGC AGGCAGATTT CTGAGTTCGA GGCCAGCCTG GTCTACGAAG
  TGAGTTCCAG GACAGCCAGG GCTACACAGA GAAACCCTGT CTCGAAAAAA AAAAAAAAAA
  AAAAAAAAAG TCTTTAGAAA ATACCTAATG GATAATACCT AAAAACTGGT TTGAGAGAAA
  R
  GGGTGCTTTG GGGAAAAAAG AAAAAAGAAG AAAAGAAGGA GGAGGAGAAA GAAGGGAGAA
  GAAGAAGACG ACGACGATGA CCTTTTTCTT TTCTCTGTGG TTTTCTTTTT GAGACAAGAT
  CTCGGTGCCA AATGACCTCA AACTCGTGGA GCTCTGCCTG CCTGGGCCTC ACCTGTGCTC
  AGGGTAAAGA CATGTGCCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324965541	CHEV_15_51696044	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239578044					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:51727894 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7083	CpG island 7083	536 bp proximal
Eif3h	eukaryotic translation initiation factor 3, subunit H	within coordinates
Rr311732	regulatory region 311732	within coordinates
Rr404375	regulatory region 404375	947 bp upstream
Tssr134286	transcription start site region 134286	950 bp downstream
Tssr134287	transcription start site region 134287	1000 bp downstream