rs239579016 SNP Detail

Summary

• ID
  rs239579016
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:105435750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTCTTCA TGTAACATGG
  CTGGAACATT ACTGTTGTAT GGACACCACA CTGAGAACTT CTTCCACAGG TACATGCTAG
  CTTGGCAGGC ATCTATAGTG GGTGTAAGTT GGTTCTGACA GTTCCTCTTT AGGGGTGTCC
  AGGCTGTGAG TGTATCTCTT GAGAATGTAT GTTGCCTGGG ACTCGGTCCC TGTGGGTTGA
  R
  GAGGATTATG ACTATGTCCC CTATGGGTAT TTGAAGAGTT GACATAAGTG ACAATATTTT
  TCTGGCCTAT GACCTGTGGC TGTGGGCCCA GCCCATGCAC ACTGAGTTCA TTGTGCCTTT
  GAGTTCTCTC TCCCCACCCC CTCCACGTGG GACCTAGGCT TGCAGTGACC TCTCTCTGTC
  CCCTGACCAG GACTCTGATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322370576	CHEV_7_112935057	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239579016					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:105435750 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19545	CpG island 19545	281 bp proximal
Dchs1	dachsous cadherin related 1	within coordinates
Gm57787	predicted gene, 57787	894 bp downstream
Rr652815	regulatory region 652815	within coordinates
Rr652816	regulatory region 652816	1101 bp proximal
Tssr74105	transcription start site region 74105	940 bp downstream
Tssr74106	transcription start site region 74106	963 bp downstream
Tssr74107	transcription start site region 74107	1001 bp downstream
Tssr74108	transcription start site region 74108	1024 bp downstream