rs239580247 SNP Detail

Summary

• ID
  rs239580247
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:98813074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTCACGGT GTCATTTGGT
  CAAGAAGACT TAGGGCTAAG TTCATTGTGC GAAGCTTGGG TTATAGTTCT GGAGAGGCTT
  TTTTGACTGA AAGCTCTGAG AAGGGACGTG GAGAACATAA GATTGGGCAC CCGGGAAAGT
  GTCGCGCTCT TGGTGACCAT CAGTGCTGGC TGGCTGTTTA GAGGGTCCCA GATTGGGTGG
  M
  TGGCCGAGAT GACGGCCGCT GTTTGAGCTG GCTGATGACT TTTCTCTCAC TGGCTCCCAG
  GAAGACACCT TTCCGGAGTC ATTAGTGCTT GGGGGAAGTC TGACAGTTTT GCGAAGGCTG
  GTTTATCATT CCTAACAGGT CATTTCATCA AGAACATTTA AGGGGCCAAG AGACAAAAAT
  TTAAGTTGCA GATAAGATGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362556710	MGP_WTSI_4_98591528	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239580247					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362556710	MGP_WTSI_4_98591528	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98813074 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14474	CpG island 14474	within coordinates
Rr398351	regulatory region 398351	1325 bp downstream
Rr595806	regulatory region 595806	948 bp distal
Rr595807	regulatory region 595807	1206 bp distal
Rr595808	regulatory region 595808	within coordinates
Rr595809	regulatory region 595809	493 bp proximal
Tssr37901	transcription start site region 37901	1900 bp downstream
Tssr37902	transcription start site region 37902	1161 bp downstream
Tssr37903	transcription start site region 37903	1094 bp downstream
Tssr37904	transcription start site region 37904	1060 bp downstream
Tssr37905	transcription start site region 37905	995 bp downstream
Tssr37906	transcription start site region 37906	944 bp downstream
Tssr37907	transcription start site region 37907	861 bp downstream
Usp1	ubiquitin specific peptidase 1	within coordinates