rs239587438 SNP Detail

Summary

• ID
  rs239587438
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:4169166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATGTTGCT GTTGATGAAT
  TGTTTTGTTG GTGATAGCAG GGATTGAACC TAGGGCCACT TGCCTGCTAG TTAAGCCCTG
  GACAACTGAG CTATAAACCA CTCCCTCCTG TAGGCACACT GTGTGCACAG TGTCGAGATT
  ATCCTCTACC TGGTACCCTG CTCTTCAGAC AGGGTCTCTC ATTAATTAGC TCAGGCTGAG
  S
  TTGAGTTCAC TTCCTTTCAC TTCAGTGTCC TGGATAGCTG AGGTGACAAT GTCTCACTAT
  GTAGCTCTGG CTGGCCTGGA ACTTGCTATG TCAATCATTT TATTCTCAAA GTCACAGACA
  TCTGATTGCC TCTATTCTCC AGGGTGCCAG GGTTAAAGGT GTGTCATCAC GCCTCGCTAT
  TTATGACTTT TATTAGCTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370559869	MGP_WTSI_7_4117769	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239587438					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370559869	MGP_WTSI_7_4117769	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:4169166 () rs orientation: forward

Symbol	Name	Function Class
Cdc42ep5	CDC42 effector protein 5	1336 bp upstream
Gm73056	predicted gene, 73056	within coordinates
Rr641924	regulatory region 641924	1318 bp distal
Rr641925	regulatory region 641925	817 bp distal
Rr641926	regulatory region 641926	184 bp proximal
Rr641927	regulatory region 641927	607 bp proximal
Tssr70452	transcription start site region 70452	1901 bp upstream
Tssr70453	transcription start site region 70453	1591 bp upstream
Tssr70454	transcription start site region 70454	1492 bp upstream
Tssr70455	transcription start site region 70455	1452 bp upstream
Tssr70456	transcription start site region 70456	1426 bp upstream
Tssr70457	transcription start site region 70457	1340 bp upstream
Tssr70458	transcription start site region 70458	1106 bp upstream