rs239587489 SNP Detail

Summary

• ID
  rs239587489
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:40964858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACCGGCGG CGGCGGCGGG
  AGCCCCATAG ACGCCTCTCG CCCTGCGAAA GGGGGAAAGG GGAGCTGGAG CGGCGCTCGG
  CCCAGCGCGG CGACGTCGCT CCTCGCACGT CCCGCCGAGG GCGCGGCCTG ATGACGCCGG
  GCGCCGGGTG GGCGGGGCCC TCCCTCAGGA GGCGGGGCGG GCAGGTGACG AACGCCCCGG
  Y
  GTTGGAGCAG CTGAGCCGGC AAGGCGACCA GGCCTAGCTA ACTGACCCCG GGGTGGTGGT
  GGCCCGGAGC ACACCGGGGT TCCGTCCAGC CGACGAGTCG CCCTTCTCCA GCCGCCCGCA
  GTGGTAGCTC GGACCCCCGG GGCCAGGGAC TCACGAGCGC GGCGTGTGGG AGACGGCGCG
  GCCCCTGGGC ACCCCGTCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss374393540	MGP_WTSI_8_41597171	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs239587489					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374393540	MGP_WTSI_8_41597171	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:40964858 () rs orientation: forward

Symbol	Name	Function Class
Cnot7	CCR4-NOT transcription complex, subunit 7	within coordinates
Cpgi20281	CpG island 20281	within coordinates
Rr662586	regulatory region 662586	524 bp distal
Rr662587	regulatory region 662587	within coordinates
Tssr2553	transcription start site region 2553	588 bp upstream
Tssr2554	transcription start site region 2554	329 bp downstream
Tssr76955	transcription start site region 76955	373 bp downstream
Tssr76956	transcription start site region 76956	30 bp downstream
Tssr76957	transcription start site region 76957	within coordinates
Tssr81046	transcription start site region 81046	1337 bp upstream
Tssr81047	transcription start site region 81047	543 bp upstream
Tssr81048	transcription start site region 81048	520 bp upstream
Tssr81049	transcription start site region 81049	471 bp upstream
Tssr81050	transcription start site region 81050	61 bp upstream
Vps37a	vacuolar protein sorting 37A	within coordinates