rs239589721 SNP Detail

Summary

• ID
  rs239589721
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84572294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGCCAGT TTAGTTTCTC
  TGGGTACTTT GAAAGAGGAT TTGCGCGGGT GCTGGCCTAA TGTGATTTGA AATTTGATTT
  TTGTTTTCTT CGCGTTAACT TTTTAGGAAA AGGTAGGAAA TTACTATCTA TTTTTAAGTG
  AGGAAGTCCT TGTTGTTGTT GTTGTTGTTG TTGTTGATGA TGATGATAAA CACCCTCCCC
  S
  TCCCTGTTAT CTTTTGTTCT GTTGGTTTCT TCACTAGGGA GGGGTAAATG TGTTATTGTT
  GAGGTTCAAG TTCTAGTCAC AGTACTTAAT AGTAGTTCAA TTATTCTGCC CGACGAACGT
  CTTAACACTA ACGCTGAGGC TTTTTCTCAG ACCAAAGTGA TGGGGGCTCA CAAAACGATT
  TGCCGCTCAG AACCCGAACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325261871	CHEV_16_84775651	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239589721					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84572294 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8384	CpG island 8384	174 bp distal
Jam2	junction adhesion molecule 2	within coordinates
Tssr139178	transcription start site region 139178	1751 bp downstream
Tssr139179	transcription start site region 139179	1531 bp downstream
Tssr139180	transcription start site region 139180	1502 bp downstream
Tssr139181	transcription start site region 139181	1313 bp downstream
Tssr139182	transcription start site region 139182	1261 bp downstream
Tssr139183	transcription start site region 139183	1232 bp downstream
Tssr139184	transcription start site region 139184	1209 bp downstream
Tssr139185	transcription start site region 139185	1168 bp downstream
Tssr139186	transcription start site region 139186	1112 bp downstream
Tssr139187	transcription start site region 139187	1092 bp downstream
Tssr139188	transcription start site region 139188	1074 bp downstream
Tssr139189	transcription start site region 139189	983 bp downstream
Tssr139190	transcription start site region 139190	967 bp downstream