rs239590804 SNP Detail

Summary

• ID
  rs239590804
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:143928164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAAACGA CACTAAGTTG
  TAGTTATAAA TAGTTAAGTA GTCACGTATG AAAGGCAACC TTGTGTGATG TGGAAGCAGT
  CTCTTCTCAA GGGCTCTGGG TCACTTGGTT TAAAGGTAAT TATTTAGCTA GGCATGCAGG
  CATATGTCTA TAATCCCAGC CCTGAGAAGG CTGAGGCAGA GAGATCTTGA GTTTAAGTAC
  Y
  ACTAGGTTAT ACAGTGAATC CCATGTAAAC AAACAAATAA GATAAATATA AATATACATA
  CGTATAACTC CTTTAAATCT ATTCTCAGAA AGGCAACATC CGCTTTGAGA AGTCGCTGGG
  ATTACCTGGT AAAGTCACTG TTGATGTCCC CTAATATCTT CATTAGATCT GGGTGGACGG
  ATGTGAGTGA CACACTGGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321708906	CHEV_5_144752215	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239590804					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:143928164 () rs orientation: forward

Symbol	Name	Function Class
Ccz1	CCZ1 vacuolar protein trafficking and biogenesis associated	within coordinates
Rr624320	regulatory region 624320	1969 bp distal
Tssr54387	transcription start site region 54387	1261 bp downstream
Tssr54388	transcription start site region 54388	1285 bp downstream
Tssr54389	transcription start site region 54389	1364 bp downstream