rs239592617 SNP Detail

Summary

• ID
  rs239592617
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:115950452 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCACCTAAA GGCTGCTGTG
  TTTCCACCTA GCGGGACCTT CTGCTGCCGG GTTACTCCGG TGTTCTTTGT GTGGATTTCT
  TGTTTTGTTA TTGGGTTTTT GGTTTTGTTT GTTTGTTTAT TTTTATTTGT TTAGTTAGTT
  AGTTAGTTAG TTAGTTAGTT AGTTTGGTTT TTCGAGACAG GGTTTCTCTG TGTAGCCCTC
  R
  CTGTCCTGGA ACTCACCTTG TAGACCAGGC TGGCCTCGAA CTCAGAGATC CGCCTGCCTC
  TGCCTCCTGA GTGCTGGGAT TAAAGGCATT TATTTGTCAC TTTATACAGC AAACGCTGTG
  ATGTATTTGA TTGCCCCATG AGCTGTTAGC TTGTCGGTTG GCTGGGACTG TGTGCTGACT
  ATCAGAATTT TCACTAAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381885436	MGP_WTSI_10_115551603	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	A	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239592617					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381885436	MGP_WTSI_10_115551603	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115950452 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2211	CpG island 2211	142 bp distal
Ptprr	protein tyrosine phosphatase receptor type R	within coordinates
Rr221625	regulatory region 221625	1382 bp proximal
Taf7l2	Taf7l2	955 bp upstream
Tssr99340	transcription start site region 99340	667 bp upstream
Tssr99341	transcription start site region 99341	614 bp upstream
Tssr99342	transcription start site region 99342	606 bp upstream
Tssr99343	transcription start site region 99343	598 bp upstream
Tssr99344	transcription start site region 99344	590 bp upstream
Tssr99345	transcription start site region 99345	284 bp upstream
Tssr99346	transcription start site region 99346	268 bp upstream
Tssr99347	transcription start site region 99347	248 bp upstream