rs239595156 SNP Detail

Summary

• ID
  rs239595156
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:77968454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTACACAGG ATGGGAGCCA
  AGTTGTCTCA ATTAAATAGA ATAATTATCT GGTATTAATT TGTATGAGAT ATAAGACCTT
  AAATTGCTTC ATGAATATGC TTAAGATGTG AGTAATTTTG CTATAAAGGA GATGGAAACT
  GAAGACATGG ATAGTTATAA ATATAATACA AATGGCAGTC TTTACAACCT GTCATAGTAC
  Y
  TTCTTCATAT GTCTCTTTCT CAGAGACCAA GCAGGGACAT AGTAAGTCAG CCACCATCAG
  CAGGTCTACT CTCTGGACCA CAGTGCAAAC GACAGCCATG GACCAAGCAC TGGCAGTCCC
  AAGAGCTTAT GAAATAAATT ATATATATTT ATATATTATA CATATATTTA TATGTTATGT
  ATTTATATAA GAAATATGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401317846	MGP_WTSI_18_78119493	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239595156					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401317846	MGP_WTSI_18_78119493	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:77968454 () rs orientation: forward

Symbol	Name	Function Class
Gm58860	predicted gene, 58860	947 bp downstream
Pstpip2	proline-serine-threonine phosphatase-interacting protein 2	within coordinates
Rr541208	regulatory region 541208	1195 bp distal
Rr541209	regulatory region 541209	514 bp distal
Tssr152064	transcription start site region 152064	1230 bp downstream
Tssr152065	transcription start site region 152065	1213 bp downstream
Tssr152066	transcription start site region 152066	1434 bp upstream
Tssr152067	transcription start site region 152067	1466 bp upstream
Tssr152068	transcription start site region 152068	1496 bp upstream
Tssr152069	transcription start site region 152069	1597 bp upstream
Tssr152070	transcription start site region 152070	1712 bp upstream
Tssr152071	transcription start site region 152071	1743 bp upstream
Tssr152072	transcription start site region 152072	1764 bp upstream
Tssr152073	transcription start site region 152073	1797 bp upstream
Tssr152074	transcription start site region 152074	1826 bp upstream
Tssr152075	transcription start site region 152075	1846 bp upstream