rs239595850 SNP Detail

Summary

• ID
  rs239595850
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:78808675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAAGGTAC AAGTTCTGGC
  TGTGTGAAAG AATGTACAAA GTTTTTTTCC CCACACTTGT ACCCCCAATT TTTCTCAGCT
  GGCAGGGTCA CTCTTTCTTT TTTTTTCCAT TTTTATTAGG TATTTAGCTC ATTTACATTT
  CCAATGCTAT ACCAAAAGTC CCCCATACCC ACCCACCCCC ACTCCCCTAC CCACCCACTC
  Y
  CCCTTTTTGG CCCTGGCGTT CCCCTGTACT GGGGCATATA AAGTTTGCGT GTCCAATGGG
  CCTCTCTTTC CAGTGATGGC CGACTAGGAG ATGGCCTAGT CGGAATTTAA TTTTTAAATT
  AGTTTAATTT ATAATATATA CTATATTTAC ATAATTTCTA CTCATTCTTT CTATAAATCC
  TTCTATGCAT GCCACTCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	I/LnJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380997681	MGP_WTSI_10_78435586	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	I/LnJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239595850					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380997681	MGP_WTSI_10_78435586	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:78808675 () rs orientation: forward

Symbol	Name	Function Class
Gm47343	predicted gene, 47343	within coordinates