rs239597859 SNP Detail

Summary

• ID
  rs239597859
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:134807620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCCGCCG CCGCCTGCTT
  GTCGCCGCAC GTAGTCTCGC CGCCCAGTCT CAGTTCAGAA GTCCACGCGA GCACTCACGA
  AACACCTGCC ATAGATACCA GTGTGCCTCA TGTCCCCTGG CGCCCCGCCA GGACATTGGG
  GAGCATCGGG CTGCAGTTTT CTAGCACGGG CCCTCGCCTT TGCAAAAATT TCACACTCTG
  K
  TAACAGTGTT TGCTAAGGAT TCCAAGGAGT GCAAGCCCCC CTCTCTGACG TGCTGGTCGA
  AATAAGTGAA GAAACTACGG TGCTTTTTTT TTTTTTTTTC TTTTTTCCTT TTTTGCCCTG
  TTCTAGCCCC TCGCAGCGTT TTCCATTTAG GAGAGGTTAA TTCGTGCGTC CCGAACTAGG
  CATAATCACC CTTGATGGTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370164175	MGP_WTSI_6_134780675	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239597859					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370164175	MGP_WTSI_6_134780675	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:134807620 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18077	CpG island 18077	14 bp distal
Crebl2	cAMP responsive element binding protein-like 2	within coordinates
Gm67917	predicted gene, 67917	562 bp upstream
Rr368197	regulatory region 368197	393 bp downstream
Rr639726	regulatory region 639726	1915 bp distal
Rr639728	regulatory region 639728	573 bp distal
Rr639729	regulatory region 639729	392 bp distal
Rr639730	regulatory region 639730	within coordinates
Rr639731	regulatory region 639731	175 bp distal
Tssr59250	transcription start site region 59250	478 bp downstream
Tssr59251	transcription start site region 59251	387 bp downstream
Tssr59252	transcription start site region 59252	320 bp downstream
Tssr59253	transcription start site region 59253	107 bp upstream
Tssr59254	transcription start site region 59254	375 bp upstream