rs239598333 SNP Detail

Summary

• ID
  rs239598333
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:14679422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTCAGAA ATAATGGAGA
  CCTGTGTCAA AGCACATTTA TCCATATAAT TTTAAAACTT AGATTCAACA TAGCTAATTT
  TCTTCTAAAG AGAAATTTCT TTTCTCTTTA GATCATTTCT TCTCTTCTTT CTTCCTTTCT
  CCCAGGACAT AAGACAAGGC CTGCCCCATT CAGGACTATC ATGGCTACAT CCATGCTTGG
  W
  GTAGCCTGTC TAAGTAAAAG GAGAAAGCCC AGTAGATTTA ATTCAGCTTG GATTTGAATC
  CTACTCTAAT CTGTTACCTA TTATTTCTTG GACTGCCTAT GAGCTCCATA ACTCAATTTC
  CTCATGCATC TGATGGGAAT TAAACACACT ATCTCTTTTC CACAGCTAGT GTTGTGGTTC
  TAATTCAATT CAATTCCAAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss390182205	MGP_WTSI_14_8622865	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239598333					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390182205	MGP_WTSI_14_8622865	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14679422 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6151	CpG island 6151	996 bp distal
Gm10044	predicted gene 10044	within coordinates
Gm26661	predicted gene, 26661	1104 bp upstream
Gm62508	predicted gene, 62508	within coordinates
Gm62514	predicted gene, 62514	1045 bp upstream
Rr487950	regulatory region 487950	1290 bp distal
Rr487951	regulatory region 487951	1056 bp distal
Rr487952	regulatory region 487952	1254 bp distal
Rr487953	regulatory region 487953	749 bp distal
Tssr124205	transcription start site region 124205	1064 bp upstream
Tssr124206	transcription start site region 124206	1077 bp upstream
Tssr124207	transcription start site region 124207	1088 bp upstream
Tssr124208	transcription start site region 124208	1100 bp upstream
Tssr124209	transcription start site region 124209	1137 bp upstream
Tssr124210	transcription start site region 124210	1163 bp upstream
Tssr127381	transcription start site region 127381	1417 bp downstream