rs239601691 SNP Detail

Summary

• ID
  rs239601691
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156959758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTAATTAG GGAAGCGTGA
  GACATGGGGT TGGAGAAGTG GCTTAGAGGT TAAGAAAACC TGCTATCCAC GCCGAGGACC
  TGGGTTTGGG CTCCAGCACC AGCATGGTGA CTCACACCAT CCGTTAGTGC AGATCCAGGG
  TATCCAATGG CTTATTCTCA CCTCTGTACC AGGCACGAAA GTGATCACAC ACATGTGCAT
  W
  CAGGCAACAC TTATAGAAAA TAAAATACAT AATTTTAAAA ATCCTGTGAA ATTGGATCTG
  GGAAATAATT TTCTTAAAAA GTGTGAAACA GAATCTAGGA AGATTCATTA TATATGGGAA
  GTTTGAAAGT GTTAATAAAT TTAGATCTAT GAGAAAAGGA TTGACTACTA TTCAAAAACA
  TTATCCTTAT TAAGCTGGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320584286	CHEV_2_156943574	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239601691					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156959758 () rs orientation: forward

Symbol	Name	Function Class
Rr568436	regulatory region 568436	554 bp distal
Rr568437	regulatory region 568437	690 bp distal
Rr568438	regulatory region 568438	289 bp distal
Rr568439	regulatory region 568439	1193 bp proximal
Samhd1	SAM domain and HD domain, 1	Intron
Tssr27144	transcription start site region 27144	1754 bp downstream