rs239604945 SNP Detail

Summary

• ID
  rs239604945
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:105289710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCCAGTTC TCGTCGCGAT
  CCTAGCAGCA GGTCAGAGAT TTGGCGGAAG TGACATGCTC TCTGGGCAGA AGAAGCCGGC
  CACGTCGCAG AGAAAAAGGG CGGAAGTGAC GTTTGCAGTT GTGGGCAGGA CGAGCCTGGA
  GCTACGCCTT CAAGCTCTTG GGGAGTAGTG AGAGTTTACT TCCGGGGCGA CTCTGAGAGC
  W
  CTAACCTCCC CCCTCCGCCC CCCCAACCCC GCGCCACCCT GCCACCCCGC CACGGGCGGA
  AGTGACTAGG GCTGTGCGCC CTTGGCGTGA TGGAGCAGCA GCAGCAGCAA CTGAGAAACG
  TGAGTGAGAG CGCAGTTGCT CTCTGGGTTA GACGTGCAGT TTGTTTCCAG GGGTACACGC
  AAGAACCCGA GGGGGAGACG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372622489	MGP_WTSI_7_112789017	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239604945					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372622489	MGP_WTSI_7_112789017	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:105289710 () rs orientation: forward

Symbol	Name	Function Class
Arfip2	ARF interacting protein 2	87 bp upstream
Cpgi19541	CpG island 19541	within coordinates
Gm22504	predicted gene, 22504	1835 bp downstream
Gm45799	predicted gene 45799	49 bp upstream
Rr400513	regulatory region 400513	within coordinates
Rr652793	regulatory region 652793	437 bp distal
Rr652794	regulatory region 652794	198 bp distal
Rr652795	regulatory region 652795	within coordinates
Timm10b	translocase of inner mitochondrial membrane 10B	within coordinates
Tssr2358	transcription start site region 2358	82 bp downstream
Tssr68382	transcription start site region 68382	within coordinates
Tssr68383	transcription start site region 68383	19 bp upstream
Tssr68384	transcription start site region 68384	280 bp upstream
Tssr68385	transcription start site region 68385	493 bp upstream
Tssr68386	transcription start site region 68386	549 bp upstream
Tssr68387	transcription start site region 68387	1834 bp upstream
Tssr74083	transcription start site region 74083	133 bp upstream